Add codespell config and make it fix some typos — heartwood

Some we had to address interactively, hence 2 DATALAD RUNCMD commits!

 [codespell]
 # Ref: https://github.com/codespell-project/codespell#using-a-config-file
 skip = .git*,*.lock,.codespellrc
 check-hidden = true
 # ignore-regex =
 ignore-words-list = ser,noes

 ## New Features
 - `rad clone` now supports the flag `--bare` which works analoguously to
 - `rad clone` now supports the flag `--bare` which works analogously to
   `git clone --bare`.
 - `rad patch show` now has improved output. It does not distinguish between the
   original author's updates and other updated, each update is marked as

 `````
 Say this is placed in `kind-echo.md`, this is what the corresponding test case
 would look lke:
 would look like:
 ``` rust
 use std::path::Path;

         // Add the target dir to the beginning of the list we will use as `PATH`.
         self.bins.insert(0, bins);
         // We don't need to re-build everytime the `build` function is called. Once is enough.
         // We don't need to re-build every time the `build` function is called. Once is enough.
         BUILD.call_once(|| {
             use escargot::format::Message;
             use radicle::logger::env_level;

  * [new tag]         v1.0-hotfix -> v1.0-hotfix
 ```
 Since Alice crated an annotated tag, resolving the reference on Bob's end yields an object of type 'tag'.
 Since Alice created an annotated tag, resolving the reference on Bob's end yields an object of type 'tag'.
 ``` ~bob
 $ git cat-file -t v1.0-hotfix

 For cases where `threshold > 1`, it is necessary to gather a quorum of
 signatures to update the Radicle identity. To do this, we use the `rad id`
 command. For now, since we are the only delegate, and `treshold` is `1`, we
 command. For now, since we are the only delegate, and `threshold` is `1`, we
 can update the identity ourselves.
 Let's add Bob as a delegate using their DID,

 If we initialize a public repository without seeding it, it won't be advertized:
 If we initialize a public repository without seeding it, it won't be advertised:
 ```
 $ rad init --name heartwood --description "radicle heartwood protocol & stack" --no-confirm --public --no-seed

 $ rad node inventory
 ```
 If we then seed it, it becomes advertized in our inventory:
 If we then seed it, it becomes advertised in our inventory:
 ```
 $ rad seed rad:zhbMU4DUXrzB8xT6qAJh6yZ7bFMK
 ✓ Inventory updated with rad:zhbMU4DUXrzB8xT6qAJh6yZ7bFMK

 Given a private repo `rad:z2ug5mwNKZB8KGpBDRTrWHAMbvHCu` belonging to Alice,
 Alice allows Bob to fetch it, and Bob, without the updated identity document
 is able to fetch it by specifiying Alice as a seed.
 is able to fetch it by specifying Alice as a seed.
 ``` ~alice
 $ rad id update --title "Allow Bob" --description "" --allow did:key:z6Mkt67GdsW7715MEfRuP4pSZxJRJh6kj6Y48WRqVv4N1tRk -q

 To push changes, run `git push`.
 ```
 The repository does not show up in our inventory, since it is not advertized,
 The repository does not show up in our inventory, since it is not advertised,
 despite being seeded:
 ```
 $ rad node inventory

     } else {
         // Write a hint to the log file, but swallow any errors.
         let mut log_file = log_file;
         let _ = log_file.write_all(format!("radicle-node started in foreground, no futher log messages are written to '{}' (this file).\n", log_path.display()).as_bytes());
         let _ = log_file.write_all(format!("radicle-node started in foreground, no further log messages are written to '{}' (this file).\n", log_path.display()).as_bytes());
         let mut child = process::Command::new(cmd)
             .args(options)

     -r, --replicas      <count>   Sync with a specific number of seeds
         --replicas-max  <count>   Sync with an upper bound number of seeds
     -v, --verbose                 Verbose output
         --debug                   Print debug information afer sync
         --debug                   Print debug information after sync
         --help                    Print help
 "#,
 };

 //! +snuffing
 //! omitting
 //! ```
 //! The `DDiff` will show the what changes are being made, overlayed on to the original diff and
 //! The `DDiff` will show the what changes are being made, overlaid on to the original diff and
 //! the diff's original file as context.
 //!
 //! ```text

         radicle::test::fixtures::repository(self.work(has_alias).as_path())
     }
     // Convenience method for exectuing a test formula with standard configuration.
     // Convenience method for executing a test formula with standard configuration.
     pub fn test(
         &self,
         test_file: &'static str,

     }
     /// A topological (parents before children) traversal of the dependency
     /// graph of this history. This is analagous to
     /// graph of this history. This is analogous to
     /// [`std::iter::Iterator::fold`] in that it folds every change into an
     /// accumulator value of type `A`. However, unlike `fold` the function `f`
     /// may prune branches from the dependency graph by returning

 /// software project. Its content-address is stored in the object's
 /// history.
 ///
 /// The `identifier` is a unqiue id that is passed through to the
 /// The `identifier` is a unique id that is passed through to the
 /// [`crate::object::Storage`].
 ///
 /// The `args` are the metadata for this [`CollaborativeObject`]. See

 /// The `parents` are other the parents of this object, for example a
 /// code commit.
 ///
 /// The `identifier` is a unqiue id that is passed through to the
 /// The `identifier` is a unique id that is passed through to the
 /// [`crate::object::Storage`].
 ///
 /// The `args` are the metadata for this [`CollaborativeObject`]
 /// udpate. See [`Update`] for further information.
 /// update. See [`Update`] for further information.
 pub fn update<T, S, G>(
     storage: &S,
     signer: &G,

         let other_secret = store.secret_key(None).unwrap().unwrap();
         assert_ne!(secret, other_secret);
         // Note that `fp` has not changed since it was initialiazed from `secret`.
         // Note that `fp` has not changed since it was initialized from `secret`.
         assert_eq!(fp.verify(&other_secret), FingerprintVerification::Mismatch);
     }
 }

                 result.as_ref().err().map(|err| err.kind()),
                 Some(Interrupted | WouldBlock | WriteZero)
             ),
             "WriteAtomic::write_or_buf must handle erros of kind {Interrupted:?}, {WouldBlock:?}, {WriteZero:?} by buffering",
             "WriteAtomic::write_or_buf must handle errors of kind {Interrupted:?}, {WouldBlock:?}, {WriteZero:?} by buffering",
         );
         result

     /// The operation timed out.
     #[error("the operation timed out")]
     Timeout,
     /// An I/O error occured.
     /// An I/O error occurred.
     #[error(transparent)]
     Io(#[from] std::io::Error),
 }

         let local_addr = net::SocketAddr::new(ip, config.rng.u16(..));
         let inventory = storage.repositories().unwrap();
         // Make sure the peer address is advertized.
         // Make sure the peer address is advertised.
         config.config.external_addresses.push(local_addr.into());
         for repo in &inventory {
             policies.seed(&repo.rid, Scope::Followed).unwrap();

         .elapse(service::GOSSIP_INTERVAL);
     assert!(
         alice.messages(eve.id()).next().is_none(),
         "The same ref announement is not relayed"
         "The same ref announcement is not relayed"
     );
     alice

     converge([&alice, &bob, &eve]);
     // Eve fetches the inital project from Bob.
     // Eve fetches the initial project from Bob.
     eve.handle.fetch(rid, bob.id, DEFAULT_TIMEOUT).unwrap();
     // Alice fetches it too.
     let old_bob = alice.handle.fetch(rid, bob.id, DEFAULT_TIMEOUT).unwrap();

             Ok(Some(last)) => Some(last.to_local_time()),
             Ok(None) => None,
             Err(e) => {
                 error!(target: "service", "Error getting the lastest gossip message from db: {e}");
                 error!(target: "service", "Error getting the latest gossip message from db: {e}");
                 None
             }
         };

     /// Get our local inventory.
     ///
     /// A node's inventory is the advertized list of repositories offered by a node.
     /// A node's inventory is the advertised list of repositories offered by a node.
     ///
     /// A node's inventory consists of *public* repositories that are seeded and available locally
     /// in the node's storage. We use the routing table as the canonical state of all inventories,

 /// Disconnect reason.
 #[derive(Debug)]
 pub enum DisconnectReason {
     /// Error while dialing the remote. This error occures before a connection is
     /// Error while dialing the remote. This error occurs before a connection is
     /// even established. Errors of this kind are usually not transient.
     Dial(Arc<dyn std::error::Error + Sync + Send>),
     /// Error with an underlying established connection. Sometimes, reconnecting

 pub struct NodeAnnouncement {
     /// Supported protocol version.
     pub version: u8,
     /// Advertized features.
     /// Advertised features.
     pub features: node::Features,
     /// Monotonic timestamp.
     pub timestamp: Timestamp,

 /// bit set to `1` for all streams she creates, while Bob will have it set to `0`.
 ///
 /// This ensures that Stream IDs never collide.
 /// Additionally, Stream IDs must never be re-used within a connection.
 /// Additionally, Stream IDs must never be reused within a connection.
 ///
 /// +=======+==================================+
 /// | Bits  | Stream Type                      |

     fn write_empty_list(&mut self);
     /// Write the buffer length at the beginning of the buffer.
     fn write_len(&mut self);
     /// Push a [`usize`] as an SSH-encoded unsiged 32-bit integer.
     /// Push a [`usize`] as an SSH-encoded unsigned 32-bit integer.
     /// May panic if the argument is greater than [`u32::MAX`].
     /// This is a convience method, to spare callers casting or converting
     /// This is a convenience method, to spare callers casting or converting
     /// [`usize`] to [`u32`]. If callers end up in a situation where they
     /// need to push a 32-bit unisgned integer, but the value they would
     /// like to push does not fit 32 bits, then the implementation will not

     }
     /// Migrate this database to the latest version.
     /// Returns the verison migrated to.
     /// Returns the version migrated to.
     pub fn migrate<M: MigrateCallback>(&mut self, callback: M) -> Result<usize, Error> {
         self.migrate_to(MIGRATIONS.len(), callback)
     }
     /// Migrate this database to the given target version.
     /// Returns the verison migrated to.
     /// Returns the version migrated to.
     pub fn migrate_to<M: MigrateCallback>(
         &mut self,
         target: usize,

         {
           "author": "z6MkkfM3tPXNPrPevKr3uSiQtHPuwnNhu2yUVjgd2jXVsVz5",
           "timestamp": 1710939751000,
           "body": "Instead of disabeling the Share button, adds a min-width param",
           "body": "Instead of disabling the Share button, adds a min-width param",
           "embeds": []
         }
       ],

         /// Should be the root [`CommentId`] if it's a top-level comment.
         #[serde(default, skip_serializing_if = "Option::is_none")]
         reply_to: Option<CommentId>,
         /// Embeded content.
         /// Embedded content.
         #[serde(default, skip_serializing_if = "Vec::is_empty")]
         embeds: Vec<Embed<Uri>>,
     },

 use crate::prelude::ReadRepository;
 /// Type name of a thread, as well as the domain for all thread operations.
 /// Note that threads are not usually used standalone. They are embeded into other COBs.
 /// Note that threads are not usually used standalone. They are embedded into other COBs.
 pub static TYPENAME: LazyLock<cob::TypeName> =
     LazyLock::new(|| FromStr::from_str("xyz.radicle.thread").expect("type name is valid"));

 ///     component i of `ψ`, denoted `ψ[i]`. This is the case if:
 ///      a. `φ[i]` does not contain an asterisk and `ψ[i]` contains an asterisk,
 ///         i.e. the symbol `*`, e.g. `a < * and abc < a*`.
 ///         Note that this is important to capture specificity accross
 ///         Note that this is important to capture specificity across
 ///         components, i.e. to conclude that `a/b/* < a/*/c`.
 ///      b. Both `φ[i]` and `ψ[i]` contain an asterisk.
 ///          A. The asterisk in `φ[i]` is further right than the asterisk in `φ[i]`,

                 })
             }
         }
         const FIELDS: &[&str] = &["name", "descrption", "defaultBranch"];
         const FIELDS: &[&str] = &["name", "description", "defaultBranch"];
         deserializer.deserialize_struct("Project", FIELDS, ProjectVisitor)
     }
 }